PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G00120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 330aa    MW: 36425.1 Da    PI: 10.4856
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G00120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.91e-11118211297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafy.efvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +f+r ws  De+++L ++++ ++++g  +  d+++++   +++s++  ++    l +K+ +LK+ + + +     ++ p+ + ++ +  f+l+ 
  OBART09G00120.1 118 AFERSWSRADELTILEAMVNHANTHG-GALPDTSDLFaALASSSLDrRDADLPKLADKVHKLKRWYDNARLP---QRCPTDDDDDTRRLFQLCG 207
                      699******************99999.556666665505566677525788899**************9988...6777778888899****** PP

           DUF573  94 kiWg 97 
                      k+Wg
  OBART09G00120.1 208 KVWG 211
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-16119211IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSSWWSWRSL FSSLANANGG GSNADASSGS GTSSPLVREA QQAAARRRST RTKKPPEEEA  60
AGSQPQPKTR PSPASKASKA SKAKALLQLG DGEPKKKPAP TPTPTQKRSN KRKRVAPAFE  120
RSWSRADELT ILEAMVNHAN THGGALPDTS DLFAALASSS LDRRDADLPK LADKVHKLKR  180
WYDNARLPQR CPTDDDDDTR RLFQLCGKVW GPPSTVLRTS PRQRHKVVGV LVQGNGANPQ  240
QAAAPKVKEK RVRRELSELY VLYPSLAQEV KAHANEYGEL IGTAFQFIGD DEARCYDDRY  300
RKMLVDKLNM KKEHADLTRS LLCTLAGYIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194113KKKPAPTPTPTQKRSNKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060580.0AP006058.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16.
GenBankAP0060610.0AP006061.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0414D03.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611454.10.0PREDICTED: uncharacterized protein LOC9269165
TrEMBLA0A0D3H3F00.0A0A0D3H3F0_9ORYZ; Uncharacterized protein
TrEMBLI1QLT10.0I1QLT1_ORYGL; Uncharacterized protein
STRINGORGLA09G0001000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162861010